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1.
Pharm. pract. (Granada, Internet) ; 22(1): 1-11, Ene-Mar, 2024.
Artigo em Inglês | IBECS | ID: ibc-231359

RESUMO

Human rhinoviruses (HRVs) are associated with a wide spectrum of clinical manifestations, ranging from mild cold symptoms to more severe respiratory illnesses, significantly burdening global healthcare systems. At the molecular level, HRVs belong to the Picornaviridae family and are classified into three species: HRV-A, HRV-B, and HRV-C. Advances in genomic sequencing and phylogenetic analysis have revealed a remarkable genetic diversity within HRV species, with over 160 serotypes identified. This genetic variability contributes to the ability of HRVs to evade host immune responses and facilitates their continuous circulation in the population. This review provides an overview of the molecular and clinical aspects of HRV infections.(AU)


Assuntos
Humanos , Rhinovirus/genética , Rhinovirus/classificação , Doenças Respiratórias/tratamento farmacológico , Genoma/genética , Picornaviridae/genética , Infecções por Picornaviridae/microbiologia
2.
PLoS One ; 17(1): e0262874, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35061862

RESUMO

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has circulated worldwide and causes coronavirus disease 2019 (COVID-19). At the onset of the COVID-19 pandemic, infection control measures were taken, such as hand washing, mask wearing, and behavioral restrictions. However, it is not fully clear how the effects of these non-pharmaceutical interventions changed the prevalence of other pathogens associated with respiratory infections. In this study, we collected 3,508 nasopharyngeal swab samples from 3,249 patients who visited the Yamanashi Central Hospital in Japan from March 1, 2020 to February 28, 2021. We performed multiplex polymerase chain reaction (PCR) using the FilmArray Respiratory Panel and singleplex quantitative reverse transcription PCR targeting SARS-CoV-2 to detect respiratory disease-associated pathogens. At least one pathogen was detected in 246 (7.0%) of the 3,508 samples. Eleven types of pathogens were detected in the samples collected from March-May 2020, during which non-pharmaceutical interventions were not well implemented. In contrast, after non-pharmaceutical interventions were thoroughly implemented, only five types of pathogens were detected, and the majority were SARS-CoV-2, adenoviruses, or human rhinoviruses / enteroviruses. The 0-9 year age group had a higher prevalence of infection with adenoviruses and human rhinoviruses / enteroviruses compared with those 10 years and older, while those 10 years and older had a higher prevalence of infection with SARS-CoV-2 and other pathogens. These results indicated that non-pharmaceutical interventions likely reduced the diversity of circulating pathogens. Moreover, differences in the prevalence of pathogens were observed among the different age groups.


Assuntos
Adenovírus Humanos/genética , COVID-19/epidemiologia , Enterovirus/genética , Infecções Respiratórias/epidemiologia , Rhinovirus/genética , SARS-CoV-2/genética , Adenovírus Humanos/classificação , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , COVID-19/diagnóstico , COVID-19/prevenção & controle , COVID-19/virologia , Criança , Pré-Escolar , Enterovirus/classificação , Feminino , Desinfecção das Mãos/métodos , Humanos , Lactente , Recém-Nascido , Japão/epidemiologia , Masculino , Máscaras/provisão & distribuição , Pessoa de Meia-Idade , Reação em Cadeia da Polimerase Multiplex , Nasofaringe/virologia , Prevalência , Quarentena/organização & administração , Infecções Respiratórias/diagnóstico , Infecções Respiratórias/prevenção & controle , Infecções Respiratórias/virologia , Rhinovirus/classificação , SARS-CoV-2/patogenicidade
3.
Viruses ; 14(1)2022 01 13.
Artigo em Inglês | MEDLINE | ID: mdl-35062345

RESUMO

Rhinoviruses (RVs) have been reported as one of the main viral causes for severe respiratory illnesses that may require hospitalization, competing with the burden of other respiratory viruses such as influenza and RSV in terms of severity, economic cost, and resource utilization. With three species and 169 subtypes, RV presents the greatest diversity within the Enterovirus genus, and despite the efforts of the research community to identify clinically relevant subtypes to target therapeutic strategies, the role of species and subtype in the clinical outcomes of RV infection remains unclear. This review aims to collect and organize data relevant to RV illness in order to find patterns and links with species and/or subtype, with a specific focus on species and subtype diversity in clinical studies typing of respiratory samples.


Assuntos
Infecções por Picornaviridae/virologia , Rhinovirus/classificação , Rhinovirus/genética , Asma/etiologia , Coinfecção/virologia , Enterovirus , Infecções por Enterovirus/virologia , Técnicas de Genotipagem , Hospitalização , Humanos , Infecções Respiratórias/virologia , Sorotipagem
4.
PLoS One ; 16(11): e0259859, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34807924

RESUMO

Rhinoviruses (RV) are a major cause of Severe Acute Respiratory Infection (SARI) in children, with high genotypic diversity in different regions. However, RV type diversity remains unknown in several regions of the world. In this study, the genetic variability of the frequently circulating RV types in Northern Tunisia was investigated, using phylogenetic and phylogeographic analyses with a specific focus on the most frequent RV types: RV-A101 and RV-C45. This study concerned 13 RV types frequently circulating in Northern Tunisia. They were obtained from respiratory samples collected in 271 pediatric SARI cases, between September 2015 and November 2017. A total of 37 RV VP4-VP2 sequences, selected among a total of 49 generated sequences, was compared to 359 sequences from different regions of the world. Evolutionary analysis of RV-A101 and RV-C45 showed high genetic relationship between different Tunisian strains and Malaysian strains. RV-A101 and C45 progenitor viruses' dates were estimated in 1981 and 1995, respectively. Since the early 2000s, the two types had a wide spread throughout the world. Phylogenetic analyses of other frequently circulating strains showed significant homology of Tunisian strains from the same epidemic period, in contrast with earlier strains. The genetic relatedness of RV-A101 and RV-C45 might result from an introduction of viruses from different clades followed by local dissemination rather than a local persistence of an endemic clades along seasons. International traffic may play a key role in the spread of RV-A101, RV-C45, and other RVs.


Assuntos
Rhinovirus/classificação , Rhinovirus/genética , Síndrome Respiratória Aguda Grave/epidemiologia , Evolução Biológica , Proteínas do Capsídeo/genética , Criança , Pré-Escolar , Epidemias , Evolução Molecular , Feminino , Variação Genética/genética , Genótipo , Humanos , Lactente , Filogenia , Filogeografia/métodos , Pneumonia , Rhinovirus/patogenicidade , Síndrome Respiratória Aguda Grave/virologia , Tunísia/epidemiologia
5.
Viruses ; 13(10)2021 10 08.
Artigo em Inglês | MEDLINE | ID: mdl-34696457

RESUMO

Rhinoviruses (RVs) constitute a substantial public health burden. To evaluate their abundance and genetic diversity in adult patients, RV RNA in respiratory samples was assessed using real-time RT-PCR and the partial nucleic acid sequencing of viral genomes. Additionally, clinical data were retrieved from patient charts to determine the clinical significance of adult RV infections. In total, the respiratory specimens of 284 adult patients (18-90 years), collected from 2013 to 2017, were analyzed. Infections occurred throughout the entire year, with peaks occurring in fall and winter, and showed a remarkably high intra- and interseasonal diversity of RV genotypes. RV species were detected in the following ratios: 60.9% RV-A 173, 12.7% RV-B, and 26.4% RV-C. No correlations between RV species and underlying comorbidities such as asthma (p = 0.167), COPD (p = 0.312) or immunosuppression (p = 0.824) were found. However, 21.1% of the patients had co-infections with other pathogens, which were associated with a longer hospital stay (p = 0.024), LRTI (p < 0.001), and pneumonia (p = 0.01). Taken together, this study shows a pronounced genetic diversity of RV in adults and underlines the important role of co-infections. No correlation of specific RV species with a particular clinical presentation could be deduced.


Assuntos
Epidemiologia Molecular , Infecções por Picornaviridae/epidemiologia , Infecções por Picornaviridae/virologia , Rhinovirus/genética , Centros de Atenção Terciária , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Coinfecção/epidemiologia , Coinfecção/virologia , Feminino , Genoma Viral , Genótipo , Alemanha/epidemiologia , Humanos , Masculino , Pessoa de Meia-Idade , Filogenia , Infecções por Picornaviridae/diagnóstico , Saúde Pública , Reação em Cadeia da Polimerase em Tempo Real , Sistema Respiratório/virologia , Infecções Respiratórias/virologia , Rhinovirus/classificação , Rhinovirus/isolamento & purificação , Estações do Ano , Adulto Jovem
6.
J Infect Dev Ctries ; 15(5): 726-735, 2021 05 31.
Artigo em Inglês | MEDLINE | ID: mdl-34106898

RESUMO

INTRODUCTION: Rhinoviruses (HRV) are among the leading causes of Severe Acute Respiratory Infection (SARI). Their burden and genetic diversity vary from one region to another and little is known in Northern African regions. This study describes epidemiological patterns and genotypic diversity of HRV in SARI cases during a two and half year's study, in Northern Tunisia. METHODOLOGY: A total of 271 SARI cases, admitted into the Pediatric Intensive Care Unit of Bechir Hamza Children's Hospital in Tunis, were collected between September 2015 and December 2017. The investigation concerned 104 samples positive for HRV and/or HEV (Human Enterovirus) obtained among these cases. Specific HRV and HEV detections were assessed by real-time PCRs. The HRV molecular typing was based on the VP4-VP2 genomic region analyses. RESULTS: Among the viral SARI cases, 33.5% and 12.3% were positive for HRV and HEV respectively. Molecular investigations showed high prevalence of HRV-A (63.3%) followed by HRV-C (30.6%) and HRV-B (6.1%) and high genotypic diversity with 27 types. HRV cases were mostly detected in toddlers younger than 6 months. A total of 16 cases (28%) were found with bacterial and/or viral co-infection. HRV-C infection and HRV-A with bacterial co-infection were associated with complicated infection. Some of the detected types showed a continuous circulation or turnover during an extended period. HRV-A101 and HRV-C45 were the most frequently detected types. CONCLUSIONS: This study revealed, for the first time, the high HRV diversity in Tunisia, a North-African region. Specific phylogenetic investigations may help to evaluate their diversity and to trace their spread and epidemiological origin.


Assuntos
Infecções por Picornaviridae/epidemiologia , Rhinovirus/isolamento & purificação , Síndrome Respiratória Aguda Grave/epidemiologia , Pré-Escolar , Feminino , Humanos , Incidência , Lactente , Recém-Nascido , Masculino , Tipagem Molecular , Infecções por Picornaviridae/virologia , Rhinovirus/classificação , Rhinovirus/genética , Síndrome Respiratória Aguda Grave/virologia , Tunísia/epidemiologia
7.
Sci Rep ; 11(1): 3209, 2021 02 05.
Artigo em Inglês | MEDLINE | ID: mdl-33547380

RESUMO

Viral co-infections occur in COVID-19 patients, potentially impacting disease progression and severity. However, there is currently no dedicated method to identify viral co-infections in patient RNA-seq data. We developed PACIFIC, a deep-learning algorithm that accurately detects SARS-CoV-2 and other common RNA respiratory viruses from RNA-seq data. Using in silico data, PACIFIC recovers the presence and relative concentrations of viruses with > 99% precision and recall. PACIFIC accurately detects SARS-CoV-2 and other viral infections in 63 independent in vitro cell culture and patient datasets. PACIFIC is an end-to-end tool that enables the systematic monitoring of viral infections in the current global pandemic.


Assuntos
COVID-19/diagnóstico , Coinfecção/diagnóstico , Aprendizado Profundo , Infecções por Vírus de RNA/diagnóstico , Vírus de RNA/isolamento & purificação , SARS-CoV-2/isolamento & purificação , Teste para COVID-19 , Coinfecção/virologia , Coronaviridae/isolamento & purificação , Humanos , Metapneumovirus/classificação , Metapneumovirus/isolamento & purificação , Redes Neurais de Computação , Orthomyxoviridae/classificação , Orthomyxoviridae/isolamento & purificação , Infecções por Vírus de RNA/virologia , Vírus de RNA/classificação , RNA-Seq , Rhinovirus/classificação , Rhinovirus/isolamento & purificação , SARS-CoV-2/classificação , Sensibilidade e Especificidade
8.
Braz J Microbiol ; 52(1): 289-298, 2021 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-33410102

RESUMO

INTRODUCTION: Human rhinovirus (HRV) is one of the most common human viral pathogens related to infections of the upper and lower respiratory tract, which can result in bronchiolitis and pneumonia. However, the relevance of HRV in human health was under-estimated for long time due to the absence of molecular targets for influenza and influenza-like syndrome surveillance in Brasília, Brazil. OBJECTIVES: The main objective of this study was analyze the clinical characteristics and outcomes of HRV infections in comparison with patients without HRV and other common respiratory viruses. MATERIALS AND METHODS: For this purpose, new specific primer sets were designed based on the high throughput sequencing analysis in previous study. These primers were used for HRV detection by RT-qPCR and Sanger sequencing of amplified cDNA of 5' genomic region. The phylogenetic tree with representative HRV isolates was constructed using the Mega X software. Statistical analysis considering the patient profiles were performed using IBM SPSS program with non-parametric tests. RESULTS: The most prevalent virus in negative samples was rhinovirus (n = 40), including three rhinovirus species (rhinovirus A, B, and C). The odds ratio associated with HRV infection was 2.160 for patients younger than 2 years and 4.367 for people living in rural areas. The multiple analysis showed lower chance of patients with HRV presenting respiratory distress. CONCLUSION: In this study, it was reported the predominance of rhinoviruses in cases of respiratory illness for negative patients for the influenza and influenza-like syndrome surveillance, being rhinorrhea, the most significant symptom associated with the disease.


Assuntos
Infecções por Picornaviridae/epidemiologia , Infecções por Picornaviridae/virologia , Infecções Respiratórias/epidemiologia , Infecções Respiratórias/virologia , Rhinovirus/genética , Brasil/epidemiologia , Criança , Pré-Escolar , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Filogenia , Infecções por Picornaviridae/diagnóstico , Rhinovirus/classificação , Rhinovirus/patogenicidade , Vírus/classificação , Vírus/genética , Vírus/isolamento & purificação
9.
J Infect Dis ; 223(2): 268-277, 2021 02 03.
Artigo em Inglês | MEDLINE | ID: mdl-32564083

RESUMO

BACKGROUND: In severe bronchiolitis, it is unclear if delayed clearance or sequential infection of respiratory syncytial virus (RSV) or rhinovirus (RV) is associated with recurrent wheezing. METHODS: In a 17-center severe bronchiolitis cohort, we tested nasopharyngeal aspirates (NPA) upon hospitalization and 3 weeks later (clearance swab) for respiratory viruses using PCR. The same RSV subtype or RV genotype in NPA and clearance swab defined delayed clearance (DC); a new RSV subtype or RV genotype at clearance defined sequential infection (SI). Recurrent wheezing by age 3 years was defined per national asthma guidelines. RESULTS: Among 673 infants, RSV DC and RV DC were not associated with recurrent wheezing, and RSV SI was rare. The 128 infants with RV SI (19%) had nonsignificantly higher risk of recurrent wheezing (hazard ratio [HR], 1.31; 95% confidence interval [CI], .95-1.80; P = .10) versus infants without RV SI. Among infants with RV at hospitalization, those with RV SI had a higher risk of recurrent wheezing compared to children without RV SI (HR, 2.49; 95% CI, 1.22-5.06; P = .01). CONCLUSIONS: Among infants with severe bronchiolitis, those with RV at hospitalization followed by a new RV infection had the highest risk of recurrent wheezing.


Assuntos
Bronquiolite/epidemiologia , Coinfecção/epidemiologia , Infecção Hospitalar/epidemiologia , Hospitalização , Infecções por Picornaviridae/epidemiologia , Sons Respiratórios , Infecções por Vírus Respiratório Sincicial/epidemiologia , Bronquiolite/diagnóstico , Bronquiolite/virologia , Coinfecção/virologia , Infecção Hospitalar/virologia , Humanos , Incidência , Tipagem Molecular , Infecções por Picornaviridae/virologia , Modelos de Riscos Proporcionais , Recidiva , Infecções por Vírus Respiratório Sincicial/virologia , Vírus Sincicial Respiratório Humano/classificação , Vírus Sincicial Respiratório Humano/genética , Rhinovirus/classificação , Rhinovirus/genética , Carga Viral
10.
J Allergy Clin Immunol ; 147(6): 2108-2117, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-33197460

RESUMO

BACKGROUND: Young children with rhinovirus (RV) infection-particularly bronchiolitis-are at high risk for developing childhood asthma. Emerging evidence suggests clinical heterogeneity within RV bronchiolitis. However, little is known about these biologically distinct subgroups (endotypes) and their relations with asthma risk. OBJECTIVE: We aimed to identify RV bronchiolitis endotypes and examine their longitudinal relations with asthma risk. METHODS: As part of a multicenter prospective cohort study of infants (age <12 months) hospitalized for bronchiolitis, we integrated clinical, RV species (RV-A, RV-B, and RV-C), nasopharyngeal microbiome (16S rRNA gene sequencing), cytokine, and metabolome (liquid chromatography tandem mass spectrometry) data collected at hospitalization. We then applied network and clustering approaches to identify bronchiolitis endotypes. We also examined their longitudinal association with risks of developing recurrent wheeze by age 3 years and asthma by age 5 years. RESULTS: Of 122 infants hospitalized for RV bronchiolitis (median age, 4 months), we identified 4 distinct endotypes-mainly characterized by RV species, microbiome, and type 2 cytokine (T2) response: endotype A, virusRV-CmicrobiomemixedT2low; endotype B, virusRV-AmicrobiomeHaemophilusT2low; endotype C, virusRSV/RVmicrobiomeStreptococcusT2low; and endotype D, virusRV-CmicrobiomeMoraxellaT2high. Compared with endotype A infants, endotype D infants had a significantly higher rate of recurrent wheeze (33% vs 64%; hazard ratio, 2.23; 95% CI, 1.00-4.96; P = .049) and a higher risk for developing asthma (28% vs 59%; odds ratio, 3.74: 95% CI, 1.21-12.6; P = .03). CONCLUSIONS: Integrated-omics analysis identified biologically meaningful RV bronchiolitis endotypes in infants, such as one characterized by RV-C infection, Moraxella-dominant microbiota, and high T2 cytokine response, at higher risk for developing recurrent wheeze and asthma. This study should facilitate further research toward validating our inferences.


Assuntos
Asma/etiologia , Asma/metabolismo , Bronquiolite/complicações , Bronquiolite/virologia , Resfriado Comum/complicações , Resfriado Comum/virologia , Rhinovirus , Fatores Etários , Suscetibilidade a Doenças , Humanos , Lactente , Recém-Nascido , Metaboloma , Proteoma , Rhinovirus/classificação , Rhinovirus/genética , Rhinovirus/imunologia , Medição de Risco , Transcriptoma
12.
J Clin Virol ; 125: 104290, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-32135487

RESUMO

Human rhinovirus (hRV) is a predominant respiratory viral pathogen. The determinants that lead to adverse clinical outcomes in hospitalized patients are unclear. Our objective was to analyze the epidemiological and clinical characteristics of hRV infections in a hospitalized population and to compare non-severe and severe infections. The study was based on data from all patients with a respiratory episode admitted to Hospital from October 2015 to September 2016. During the study period, out of 2465 respiratory episodes, 434 were detected positive for hRV. Most of the coinfections involved the respiratory syncytial virus (RSV) and very few influenza viruses. A possible interference between rhinovirus and influenza virus is suggested. Airway involvement was present in a large part of hRV infections with 28.4 % (n = 48/169) of bronchiolitis and 3.6 % (n = 6/169) of bronchitis. One third of patients had at least one of the following severity criteria: need for oxygen therapy, hospitalization ≥ 5 days, and admission to the ICU. On multivariate analysis, a respiratory co-infection with RSV and the presence of a chronic respiratory disease (including a history of asthma) were shown to be independent risk factors for the onset of a severe infection in patients ≤ 2 years old. In a case control study based on 70 patients, hRV-A was the predominant lineage, followed closely by hRV-C. High viral load or viral genotypes were not associated with severe infection.


Assuntos
Coinfecção/virologia , Hospitalização/estatística & dados numéricos , Infecções por Picornaviridae/epidemiologia , Infecções por Vírus Respiratório Sincicial/epidemiologia , Rhinovirus/genética , Índice de Gravidade de Doença , Adolescente , Adulto , Idoso , Estudos de Casos e Controles , Criança , Pré-Escolar , Coinfecção/epidemiologia , Comorbidade , Feminino , Genótipo , Humanos , Lactente , Masculino , Pessoa de Meia-Idade , Vírus Sincicial Respiratório Humano/genética , Rhinovirus/classificação , Rhinovirus/patogenicidade , Fatores de Risco , Carga Viral , Adulto Jovem
13.
Arch Virol ; 165(3): 793-797, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-31980941

RESUMO

Enteroviruses (EVs) and rhinoviruses (RVs) are significant pathogens of humans and are the subject of intensive clinical and epidemiological research and public health measures, notably in the eradication of poliovirus and in the investigation and control of emerging pathogenic EV types worldwide. EVs and RVs are highly diverse in their antigenic properties, tissue tropism, disease associations and evolutionary relationships, but the latter often conflict with previously developed biologically defined terms, such as "coxsackieviruses", "polioviruses" and "echoviruses", which were used before their genetic interrelationships were understood. This has created widespread formatting problems and inconsistencies in the nomenclature for EV and RV types and species in the literature and public databases. As members of the International Committee for Taxonomy of Viruses (ICTV) Picornaviridae Study Group, we describe the correct use of taxon names for these viruses and have produced a series of recommendations for the nomenclature of EV and RV types and their abbreviations. We believe their adoption will promote greater clarity and consistency in the terminology used in the scientific and medical literature. The recommendations will additionally provide a useful reference guide for journals, other publications and public databases seeking to use standardised terms for the growing multitude of enteroviruses and rhinoviruses described worldwide.


Assuntos
Enterovirus/classificação , Rhinovirus/classificação , Terminologia como Assunto , Humanos
14.
J Allergy Clin Immunol Pract ; 8(2): 588-595.e4, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31520837

RESUMO

BACKGROUND: Respiratory syncytial virus (RSV)- and rhinovirus (RV)-induced bronchiolitis are associated with an increased risk of asthma, but more detailed information is needed on virus types. OBJECTIVE: To study whether RSV or RV types are differentially associated with the future use of asthma control medication. METHODS: Over 2 consecutive winter seasons (2008-2010), we enrolled 408 children hospitalized for bronchiolitis at age less than 24 months into a prospective, 3-center, 4-year follow-up study in Finland. Virus detection was performed by real-time reverse transcription PCR from nasal wash samples. Four years later, we examined current use of asthma control medication. RESULTS: A total of 349 (86%) children completed the 4-year follow-up. At study entry, the median age was 7.5 months, and 42% had RSV, 29% RV, 2% both RSV and RV, and 27% non-RSV/-RV etiology. The children with RV-A (adjusted hazard ratio, 2.3; P = .01), RV-C (adjusted hazard ratio, 3.5; P < .001), and non-RSV/-RV (adjusted hazard ratio, 2.0; P = .004) bronchiolitis started the asthma control medication earlier than did children with RSV bronchiolitis. Four years later, 27% of patients used asthma control medication; both RV-A (adjusted odds ratio, 3.0; P = .03) and RV-C (adjusted odds ratio, 3.7; P < .001) etiology were associated with the current use of asthma medication. The highest risk was found among patients with RV-C, atopic dermatitis, and fever (adjusted odds ratio, 5.0; P = .03). CONCLUSIONS: Severe bronchiolitis caused by RV-A and RV-C was associated with earlier initiation and prolonged use of asthma control medication. The risk was especially high when bronchiolitis was associated with RV-C, atopic dermatitis, and fever.


Assuntos
Asma , Bronquiolite , Vírus da Influenza A Subtipo H1N1 , Infecções por Picornaviridae , Rhinovirus , Asma/tratamento farmacológico , Asma/epidemiologia , Asma/virologia , Bronquiolite/tratamento farmacológico , Bronquiolite/epidemiologia , Criança , Pré-Escolar , Finlândia/epidemiologia , Seguimentos , Humanos , Lactente , Masculino , Infecções por Picornaviridae/complicações , Estudos Prospectivos , Sons Respiratórios , Rhinovirus/classificação , Rhinovirus/patogenicidade
15.
Influenza Other Respir Viruses ; 14(1): 67-71, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31568667

RESUMO

To understand the genetic diversity and patterns of circulation of rhinoviruses (RV) and enteroviruses (EV) in Singapore, we retrospectively screened 2950 nasal swab samples collected from adults presenting to primary care services with signs of febrile illness in Singapore during 2007-2013 using sequencing and phylogenetic methods. Through sequencing and phylogenetic analysis, our results show the year-round circulation of the three rhinovirus species, A, B, and C. A diverse set of RV/EV serotypes were detected in Singapore with a predominance of RV-A in all years, whereas serotypes EV-C A21 and EV-D68 were only sporadically detected. This study highlights the previously unrecognized diversity and burden in the adult population in Singapore.


Assuntos
Infecções por Enterovirus/virologia , Enterovirus/genética , Febre/virologia , Variação Genética , Infecções por Picornaviridae/virologia , Rhinovirus/genética , Adolescente , Adulto , Idoso , Enterovirus/classificação , Enterovirus/isolamento & purificação , Infecções por Enterovirus/epidemiologia , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Filogenia , Infecções por Picornaviridae/epidemiologia , Estudos Retrospectivos , Rhinovirus/classificação , Rhinovirus/isolamento & purificação , Estações do Ano , Singapura/epidemiologia , Adulto Jovem
16.
Pediatr Infect Dis J ; 39(4): 283-286, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-31876616

RESUMO

BACKGROUND: Rhinovirus is the most common virus causing respiratory tract illnesses in children. Rhinoviruses are classified into species A, B and C. We examined the associations between different rhinovirus species and respiratory illness severity. METHODS: This is a retrospective observational cohort study on confirmed rhinovirus infections in 134 children 3-23 months of age, who were enrolled in 2 prospective studies on bronchiolitis and acute otitis media, respectively, conducted simultaneously in Turku University Hospital, Turku, Finland, between September 2007 and December 2008. RESULTS: Rhinovirus C is the most prevalent species in our study, and it was associated with severe wheezing and febrile illness. We also noted that history of atopic eczema was associated with wheezing. CONCLUSIONS: Our understanding of rhinovirus C as the most pathogenic rhinovirus species was fortified. Existing research supports the idea that atopic characteristics are associated with the severity of the rhinovirus C-induced illness.


Assuntos
Enterovirus/patogenicidade , Febre/virologia , Infecções por Picornaviridae/complicações , Sons Respiratórios/etiologia , Infecções Respiratórias/complicações , Pré-Escolar , Feminino , Finlândia , Humanos , Lactente , Masculino , Estudos Prospectivos , Sons Respiratórios/fisiopatologia , Infecções Respiratórias/virologia , Estudos Retrospectivos , Rhinovirus/classificação , Rhinovirus/patogenicidade
17.
J Med Virol ; 91(12): 2108-2116, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31389049

RESUMO

PROBLEM: Rhinoviruses (RVs), the most common causes of acute respiratory infections in young children and infants, are highly diverse genetically. OBJECTIVE: To characterize the RV types detected with respiratory illness episodes in infants in Nepal. STUDY METHODS: Infants born to women enrolled in a randomized trial of maternal influenza immunization in rural, southern Nepal were followed with household-based weekly surveillance until 180 days of age. Infants with respiratory symptoms had nasal swabs tested for twelve respiratory viruses. A subset with RV alone was selected for sequencing of the VP4/2 gene to identify RV types. RESULTS: Among 547 RV-only positive illnesses detected from December 2012 to April 2014, 285 samples (52%) were sequenced. RV-A, B, and C species were detected in 193 (68%), 18 (6%), and 74 (26%) specimens, respectively. A total of 94 unique types were identified from the sequenced samples, including 52 RV-A, 11 RV-B, and 31 RV-C. Multiple species and types circulated simultaneously throughout the study period. No seasonality was observed. The median ages at illness onset were 88, 104, and 88 days for RV-A, B, and C, respectively. The median polymerase chain reaction cycle threshold values did not differ between RV species. No differences between RV species were observed for reported respiratory symptoms, including pneumonia, or for medical care-seeking. CONCLUSIONS: Among very young, symptomatic infants in rural Nepal, all three species and many types of RV were identified; RV-A was detected most frequently. There was no association between RV species and disease severity.


Assuntos
Filogenia , Infecções por Picornaviridae/epidemiologia , Infecções por Picornaviridae/virologia , Infecções Respiratórias/virologia , Rhinovirus/classificação , Doença Aguda/epidemiologia , Características da Família , Variação Genética , Humanos , Lactente , Recém-Nascido , Nepal/epidemiologia , Infecções Respiratórias/epidemiologia , População Rural/estatística & dados numéricos , Análise de Sequência de DNA
18.
Infect Genet Evol ; 75: 103996, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31401308

RESUMO

BACKGROUND: Enteroviruses (EVs) and rhinoviruses (RVs) belong to the Enterovirus genus within the Picornaviridae family, and show genetic similarities. These viruses are related to mild diseases, but EVs infections can sometimes lead to more severe complications. Current diagnostic molecular techniques should discriminate between the four EV and the three RV species that infect humans. The aim was to revise the EV and RV PCR-confirmed specimens by sequencing for genetic characterisation. MATERIAL AND METHODS: Respiratory tract specimens were collected from patients with suspicion of respiratory infection. Respiratory viruses' laboratory-confirmation was performed by commercial multiplex real-time RT-PCR assays. Genetic characterisation of all EV and in a selection of RV was performed based on the phylogenetic analyses of partial VP1 and VP4/2 sequences, respectively. RESULTS: From 19,957 tested specimens, 309 (1.5%) were EV-positive, 2546 (12%) were RV-positive, and 233 (1%) were EV/RV co-detections. The phylogenetic analyses revealed that: among single EV detections, 177/309 (57%) were characterised as EV, 2/309 (1%) as RV, and 130/309 (42%) could not be typed; among single 1771 RV detections (Ct < 35), 1651/1771 (93%) were characterised as RV, 3/1771 (0.3%) as EV and 117/1771 (6.7%) could not be typed. Among EV/RV co-detections, 62/233 (27%) were characterised as EV, 130/233 (56%) as RV and 41/233 (18%) could not be typed. CONCLUSIONS: A diagnostic method well considered for routine laboratory-confirmation of respiratory viruses should discriminate EV and RV targets. RVs are usually associated with mild respiratory disease, but the potential relatedness of EVs to neurological complications makes their monitoring mandatory. Therefore, an accurate detection and differentiation should be required in commercial diagnostic solutions.


Assuntos
Infecções por Enterovirus/diagnóstico , Infecções por Enterovirus/virologia , Enterovirus/genética , Genoma Viral , Genômica , Infecções por Picornaviridae/diagnóstico , Infecções por Picornaviridae/virologia , Rhinovirus/genética , Diagnóstico Diferencial , Enterovirus/classificação , Enterovirus/isolamento & purificação , Genômica/métodos , Humanos , Técnicas de Diagnóstico Molecular , Filogenia , Reação em Cadeia da Polimerase , Infecções Respiratórias/diagnóstico , Infecções Respiratórias/virologia , Rhinovirus/classificação , Rhinovirus/isolamento & purificação
19.
J Clin Microbiol ; 57(9)2019 09.
Artigo em Inglês | MEDLINE | ID: mdl-31270180

RESUMO

The pathogenesis of human rhinovirus (HRV) during severe respiratory disease remains undefined; thus, we aimed to explore the relationship between the HRV molecular subtyping results obtained during severe and asymptomatic childhood infections. Nasopharyngeal/oropharyngeal swabs from children (1 to 59 months of age) hospitalized with pneumonia and from age-frequency-matched controls were collected between August 2011 and August 2013. Swabs were tested for respiratory pathogens, including HRV, using quantitative real-time PCR assays. HRV-positive samples were sequenced for phylogenetic analysis by targeting the 5' noncoding region (5'NCR). Our data showed that there were no differences in the prevalence of HRV detection among cases and controls (21% versus 20%, P = 0.693); however, among children 13 to 59 months old, HRV detection was more often case associated (21% versus 16%; P = 0.009), with the results mainly driven by HRV-C (12% versus 7%; P = 0.001). Overall, there were no differences in the results of molecular subtyping of the HRV species prevalence among cases (for HRV-A, 48%; for HRV-B, 7%; for HRV-C, 45%) and controls (for HRV-A, 45%; for HRV-B, 10%; for HRV-C, 45% [P = 0.496]). Those with pneumonia and HRV-C were older (12.1 versus 9.4 months, P = 0.033) and more likely to present with wheeze (35% versus 25%, P = 0.031) than those with HRV-A cases. Thus, the rate of HRV detection was high, with similar degrees of genetic diversity among cases and controls, confounding the interpretation of the presence of HRV in nasopharyngeal samples for attribution of a causal role in the pathogenesis of severe pneumonia in infants. However, among children 13 to 59 months of age, HRV detection, in particular, HRV-C detection, was associated with case status, especially among children with wheezing disease.


Assuntos
Portador Sadio/virologia , Genótipo , Infecções por Picornaviridae/virologia , Pneumonia Viral/virologia , Rhinovirus/classificação , Rhinovirus/genética , Regiões 5' não Traduzidas , África Subsaariana/epidemiologia , Portador Sadio/epidemiologia , Estudos de Casos e Controles , Pré-Escolar , Feminino , Variação Genética , Técnicas de Genotipagem , Hospitais , Humanos , Lactente , Masculino , Epidemiologia Molecular , Nasofaringe/virologia , Filogenia , Infecções por Picornaviridae/epidemiologia , Pneumonia Viral/epidemiologia , Prevalência , Rhinovirus/isolamento & purificação , Análise de Sequência de DNA
20.
Viruses ; 11(6)2019 06 05.
Artigo em Inglês | MEDLINE | ID: mdl-31195744

RESUMO

Rhinovirus (RV) is an RNA virus that causes more than 50% of upper respiratory tract infections in humans worldwide. Together with Respiratory Syncytial Virus, RV is one of the leading causes of viral bronchiolitis in infants and the most common virus associated with wheezing in children aged between one and two years. Because of its tremendous genetic diversity (>150 serotypes), the recurrence of RV infections each year is quite typical. Furthermore, because of its broad clinical spectrum, the clinical variability as well as the pathogenesis of RV infection are nowadays the subjects of an in-depth examination and have been the subject of several studies in the literature. In fact, the virus is responsible for direct cell cytotoxicity in only a small way, and it is now clearer than ever that it may act indirectly by triggering the release of active mediators by structural and inflammatory airway cells, causing the onset and/or the acute exacerbation of asthmatic events in predisposed children. In the present review, we aim to summarize the RV infection's epidemiology, pathogenetic hypotheses, and available treatment options as well as its correlation with respiratory morbidity and mortality in the pediatric population.


Assuntos
Infecções por Picornaviridae , Hipersensibilidade Respiratória/virologia , Rhinovirus , Imunidade Adaptativa , Antivirais/uso terapêutico , Asma/etiologia , Asma/virologia , Bronquiolite/microbiologia , Bronquiolite/virologia , Criança , Saúde da Criança , Humanos , Imunidade Celular , Lactente , Inflamação/imunologia , Inflamação/virologia , Infecções por Picornaviridae/complicações , Infecções por Picornaviridae/epidemiologia , Infecções por Picornaviridae/terapia , Infecções por Picornaviridae/transmissão , Hipersensibilidade Respiratória/imunologia , Sons Respiratórios/etiologia , Rhinovirus/classificação , Rhinovirus/efeitos dos fármacos , Rhinovirus/imunologia , Rhinovirus/patogenicidade , Sorogrupo , Vacinas Virais
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